PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_D8AFBAC97.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YB
Protein Properties Length: 252aa    MW: 25889 Da    PI: 8.4116
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_D8AFBAC97.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB42.71.4e-131452152696
                  NF-YB  26 kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                             + kda     e +  fi ++++ a+d c+  kr+tin++d++ al ++ f ++vepl++ l+++r  +++
  Traes_4DS_D8AFBAC97.2 145 IVNKDAMAAFAESARIFIHYLSATANDVCKDGKRQTINAEDVFKALDEIEFPEFVEPLRTALEEFRSRNAA 215
                            478999999*********************************************************87665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.3E-32110248IPR009072Histone-fold
SuperFamilySSF471131.5E-25115248IPR009072Histone-fold
PfamPF008087.9E-8146190IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAGEAKEPEA AAQGEGSKAK AKAKKPKAAA APGDEGEGAK AKKPKAAAAA ADEGEGAKAK  60
KPKAAAAAAD EGEGAKAKSK KPKAAAAAAN EGSKGKDKAA AAPVAAMTEA EVEELPKAIV  120
RRLVKDKLAR AASGGEGAEG GAEVIVNKDA MAAFAESARI FIHYLSATAN DVCKDGKRQT  180
INAEDVFKAL DEIEFPEFVE PLRTALEEFR SRNAARKPAS GKKQSEKKRK LDKEAVPEEQ  240
NGAADEANAD ED
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3710680.0AK371068.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2124A02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238535.12e-77PREDICTED: DNA polymerase epsilon subunit 3-like
TrEMBLW5ET851e-167W5ET85_WHEAT; Uncharacterized protein
STRINGBRADI4G38527.15e-77(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104143744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.14e-31nuclear factor Y, subunit B11
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]